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Modeling missing loops of protein structure using Modeller interface in UCSF ChimeraX
03:05
Extract Protein Sequences (FASTA) from PDB Files Using UCSF ChimeraX: A Step-by-Step Tutorial
06:01
Concatenating DCD Files into a Single DCD File with VMD | Easy Tcl Script Tutorial
03:52
VMD tutorials : NAMD Plot Plugin
08:06
ChimeraX tutorials [editing and cleaning PDB files]
05:21
How to mutate a protein in UCSF Chimera?
03:36
How to calculate the net charge of a system with VMD?
03:31
How to install UCSF Chimera in Ubuntu (Linux) ?
02:48
NAMD : FATAL ERROR: ABNORMAL EOF FOUND - buffer=*END*
09:25
MDAnalysis tutorial: Extract/Save atomic information as data arrays from/to PDB files (B_factors)
09:29
Understanding Resolution values of Structures in Protein Data Bank
10:00
Movie Making from molecular dynamics simulation with VMD
05:59
MDtraj Tutorials- (5)- RMSF analysis of protein MD trajectory
09:26
MDtraj Tutorials- (4)- RMSD analysis of protein MD trajectory
09:16
MDtraj Tutorials- (3) atom selection language
06:56
Python for computational chemistry -For Loops
10:20
MDtraj Tutorials- (2) Load, slice, align,combine,and save MDs trajectories
07:12
MDtraj Tutorials- (1) Introduction and Installation with Conda
12:44
VMD data analysis automatization (Part3): SASA and H-bonding analysis of trajectory
14:28
VMD data analysis automatization (part2): RMSF and Salt bridges analysis of trajectory
15:33
VMD data analysis automatization (part1): Load, wrap, align, and calculate RMSD of trajectory
08:32
VMD Scripting : How to rotate a protein around specific axis and save a new rotated pdb file?
11:11
Calculation of the number of solvent molecules around protein during molecular dynamics simulation
07:37
Python for computational chemistry -Tuples
08:59
Python for computational chemistry - Lists
05:13
Python for computational chemistry -Lists - part two
12:53
How to calculate the radius of gyration for a protein using VMD?
09:26
Steepest (Gradient) descent algorithm for energy minimization
04:56
Python for computational chemistry -Data types
06:24
Python for computational chemistry - Variables and modules
10:52
Python for computational chemistry -beginners tutorials -Introduction
19:26
Pairwise RMSD analysis of a trajectory by using MDanalysis (Python)
18:52
PACKMOL tutorial- Solvation of proteins in non-standard solvents
10:03
Energy Minimization in Molecular Dynamics Simulations
09:49
Spherical atomic radial distribution function g(r) calculation in VMD
05:38
Solvation of a protein in a water sphere by using VMD
06:06
Solvation of a protein in a water box by using VMD
02:44
How to convert a GROMACS trajectory (xtc format) to a DCD trajectory in VMD?
17:45
PDB structure manipulation in VMD (change residue and chain identity of a protein)
05:14
How to measure the distance between two amino acids in NAMD protien dynamics by using VMD ?
13:35
Hydrogen bonding analysis of protein dynamics in VMD
00:22
Inside the fastest computer in Europe : CSCS Swiss National Supercomputing Centre
06:06
How to calculate solvent accessible surface area (SASA) of a protein in VMD?
03:08
TCL Tutorials : Declaring variables in TCL ( Set command) | 3 minutes
03:08
How to use PBC wrap command in vmd to re-center a protein in a simulation box?
04:42
TCL Tutorials : Installing TCL interactive tutor and printing out strings | 4 minutes
02:34
How to install VMD in Ubuntu (Linux) ?
00:44
Let's code and compute !
14:39
Introduction to molecular dynamics simulations , part1
14:17
Introduction to TCL Scripting in VMD part2 (write your first script from scratch)
03:31
Introduction to molecular dynamic simulations set up in NAMD
01:34
How to Fix "Nvidia Driver is not opening" in one minute ?
03:51
Creating high quality figures for publishing in 2 minutes by using VMD
12:21
Graphical representations of proteins in VMD
05:40
Salt bridge analysis of a trajectory using VMD
08:00
RMSF analysis of trajectory (DCD file) using VMD
10:25
Introduction to Scripting in VMD (Tk Console.)
02:51
Writing shorter trajectories (DCD files) using VMD
03:31
RMSD analysis of trajectory (DCD file) using VMD
02:37
Protein mutation in VMD
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