57:39

2024 updated single-cell guide - Part 2: RNA Integration and annotation

40:12

2024 updated single-cell guide - Part 1: RNA preprocessing and quality control

21:21

Single-cell pseudotime and gene regulatory analysis with CellOracle

09:36

Processing single-cell RNAseq counts with simpleaf (alevin-fry)

13:13

RNAseq mapping with Salmon for differential expression

09:59

Pseudobulk single-cell analysis in Python with Scanpy and pyDeseq2

16:19

Differential expression in Python with pyDESeq2

13:55

Single-cell background decontamination in R and Python with SoupX

17:51

Can chatGPT do single-cell bioinformatic analysis?

20:09

Comparing single-cell RNA integration methods | Which is the best?

16:24

Single-cell trajectory and pseudotime analysis with Monocle3 and Seurat in R

05:28

Easy RNAseq volcano plot with one line of code

15:14

Applying random forest classifiers to single-cell RNAseq data

17:36

Introduction to single cell ATAC data analysis in R

01:18:40

Complete single-cell RNAseq analysis walkthrough | Advanced introduction

09:56

Introduction to spatial sequencing data analysis

05:59

Single-cell gene co-expression | single-cell RNAseq methods

03:05

3 minute GSEA tutorial in R | RNAseq tutorials

06:40

Simple guide to GSEA and plotting in python

04:36

Convert h5ad anndata to a Seurat single-cell R object

11:38

Guide to filtering and subsetting single-cell anndata and pandas objects | basic and advanced

08:58

Label single-cells automatically in python | scVI label transfer

09:47

Beautiful and customizable RNAseq volcano plots

06:55

How to remove single-cell doublets in python

13:00

Single-cell analysis with scVI machine-learning toolkit

07:21

Single-cell integration in python with scanpy

04:16

RNAseq volcano plot of differentially expressed genes

08:07

How to do gene ontology analysis in python

05:16

RNAseq analysis | Gene ontology (GO) in R

11:53

Single-cell gene set activity with AUCell

10:04

Label single-cell RNA data automatically with SingleR in R

23:50

How to do single-cell RNA velocity analysis | Complete introduction

00:52

Global COVID-19 variant spread and rise of BA.2

07:38

3D rotating single-cell UMAP

10:58

Turning my cat into a TSNE plot

05:58

False discovery p value correction

05:08

R versus Python for bioinformatics

01:05

COVID-19 variant map with new Omicron sister variant BA.2 (outdated)

12:09

Transcription factor regulatory activity in single cell transcriptomics

06:34

Make animated figures and gifs in python

10:07

Publication quality line plots in python

16:57

High quality figures in Python with matplotlib and seaborn - bar plots

20:13

Single cell analysis in python with Scanpy

05:44

Virus genome assembly and consensus sequence from reads

05:04

Testing statistical significance between samples in python

03:41

How to calculate enrichment p values in python using hypergeometric distributions

23:17

How to calculate sequence similarity without alignment

03:48

Simple gene ontology and pathway enrichment from a gene list

08:58

Make a simple heatmap of differentially expressed genes in R

02:06

Convert Ensembl IDs to gene symbols in R

12:35

How to make a heatmap of differentially expressed genes in R (complex version).

00:51

Map of COVID-19 variant change over time, with Omicron surge

08:28

Convert Ensembl ids to gene names/symbols in python by parsing the GTF file

06:56

Installing and running Cell Ranger on 10x single-cell RNAseq data

02:35

Single-cell sequencing explained in 2 minutes

07:38

Sequence alignment in Python, and with no intermediate files

01:05

Map of COVID-19 variant change over time

04:10

Installing Miniconda and basic conda usage

03:51

Editing text files through the linux BASH terminal using vim - Introduction to linux - part 4

06:51

Directing and piping STDOUT in Linux