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Ben Langmead @UCrDmN9uRVJR7KM8aRE_58Zw@youtube.com

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Videos on algorithms & data structures for analysis of DNA s


39:58
BWT for repetitive texts, part 3: Toehold lemma setup
28:31
Suffix arrays: the suffix tree is hiding
42:47
BWT for repetitive texts, part 2: Run-length FM index
09:24
Suffix arrays: building
21:17
Suffix arrays: maximum skipping
10:05
Suffix arrays: min LCP skipping
16:37
Suffix arrays: basic queries
12:33
Suffix arrays: definition & size
24:56
Matching statistics on the suffix tree
16:13
Suffix trees: matching statistics
23:57
Suffix trees: suffix links
16:13
Suffix trees: basic queries
12:50
Suffix trees: building
28:16
Suffix trees: definition & size
17:00
Suffix tries: size
26:27
Suffix tries: introduction
27:51
Tries
29:26
BWT for repetitive texts, part 1: Runs
43:45
Wheeler graphs, part 5: Data structures
16:15
Wheeler graphs, part 4: Consecutivity
38:53
Wheeler graphs, part 3: Definition
21:29
Wheeler graphs, part 2: BW order for graphs
24:57
Wheeler graphs, part 1: substrings to paths
29:51
FM Index, part 2: efficient matching
22:18
FM Index, part 1: efficient reversal
19:48
Wavelet trees, part 2
28:23
Wavelet trees, part 1
34:30
Clark's select
20:04
Burrows-Wheeler Transform, part 2
29:16
Burrows-Wheeler Transform, part 1
25:03
High order empirical entropy
18:50
CountMin sketch, part 3
34:40
CountMin sketch, part 2: proving error bound
26:48
CountMin sketch, part 1
15:23
Markov's inequality
37:33
Similarity & MinHash
34:44
Cardinality part 2: proof & kth minimum value
29:34
Cardinality part 1: the hat problem
43:40
Universal hashing with a prime field
22:43
Universal hashing part 1: motivation
32:31
Coupon collector and more Bloom filters
24:52
Bloom filters, part 2
28:45
Bloom filters, part 1
12:43
Hashes & randomness
21:56
Hash tables & probability, part 2
43:19
Hash tables & probability, part 1
24:14
Randomness & independence
59:26
Entropy & coding
22:02
Intro: Indexing
22:56
Jacobson's rank
37:06
Bitvectors and rank/select
26:01
Dashing: fast & accurate genomic distances with HyperLogLog
10:33
ADS1: Meet the family: global and local alignment
12:10
ADS1: Using dynamic programming for edit distance
12:10
ADS1: Using dynamic programming for edit distance
09:35
ADS1: Genome indexes used in research
09:26
ADS1: Variations on k-mer indexes
12:32
ADS1: Solving the edit distance problem
09:37
ADS1: The future is long?
08:34
ADS1: Assemblers in practice