15:45
ASM 2021 Phage and IBD
28:57
ABACBS Presentation 2020
04:51
Why does paired end sequencing help assembly?
08:48
illumina paired end sequencing
07:07
Sanger sequencing
04:51
Pacific Biosciences Sequencing
04:47
Oxford Nanopore ONT Sequencing
03:48
454 pyrosequencing
03:31
What does it mean to sequence a genome?
02:55
Introduction to Illumina Sequencing
02:40
Ion Torrent Sequencing
06:09
Genome Peek
04:49
Introduction to k-mers
03:03
Introduction on counting k-mers
04:27
Counting k-mers with Bloom filters
05:15
k-mer algorithms: Compare and Swap
11:06
Bloom Filters
03:58
Counting Quotient Filters
04:43
Count Min Sketch
03:55
CheckM for Genome Consistency
03:35
BLAST 7 scoring gaps
04:18
BLAST 8 Probability
08:13
BLAST 9 E values
06:51
BLAST 10 Algorithms
06:11
BLAST 11 PSWM
09:05
Central Dogma
08:03
ESKAPE Pathogens
08:48
Klebsiella Introduction
09:37
Metagenome Binning
09:38
Subsystems Introduction
04:12
Subsystem Classification
06:41
Subsystems How to Annotate Genomes and Metagenomes
09:40
BLAST 6 scoring alignments
03:43
BLAST 5 BLOSUM62
08:06
BLAST 4 PAM vs BLOSUM
05:44
BLAST 3 amino acid differences
13:44
Assignment 1 solution
02:11
BLAST 2 seed and extend
06:27
BLAST 1
03:08
Assignment 3
07:08
Antibiotics 2 mechanisms of resistance
10:45
Antibiotics 4 Resistance Timeline
02:58
Antibiotics 5 resistance databases
04:43
Antibiotics 3 Role of HGT in antibiotic resistance
04:02
Antibiotics 1 mode of action
05:39
Assembly problems 1 ... repeats
03:49
de Bruijn graph assembly for DNA sequences
02:15
Overlap layout consensus sequence assembly approach
01:40
Greedy Assembly of DNA Sequences
05:39
Naive DNA sequence assembly
02:15
An overview of DNA sequence assembly
04:35
Definitions
05:18
Steps In Genome Sequencing
03:16
Assignment1
06:49
What is genome sequencing part 2
03:30
What is genome sequencing part 1
02:42
Learning Outcomes
07:53
Why we are going to use AWS in the course
10:12
SSH Keys
04:55
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