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Scientific Computing Software (HHMI Janelia) @UC1-iESQ8NCZuys-Y2JUaQhw@youtube.com

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58:09
How To... Use repp to Facilitate Molecular Cloning
56:15
How to... use SNT to segment neurons
47:10
How To... combine registered data to create an atlas
48:08
Bigstream
50:39
How to publish your data set (with or without a paper)
01:11:16
"Transformers in Natural Language Processing & Beyond" by Justin Joyce
01:24:17
How To... Read and Write OME-NGFF Formatted Images
49:01
How To... Register Your Data to an Atlas and Move Things Back and Forth
03:32
VVDViewer: Multi-channels image adjustment
51:41
"Practical Deep Learning" by Habib Bukhari
01:01:28
How to... work with json metadata using n5 and jq
50:57
How To... detect fluorescent spots in microscopy images using RS-FISH
56:38
How To... align huge microscopy images with Big Stitcher
01:14:42
Code review of Napari-ChatGPT by Loic Royer (CZI Biohub)
43:33
Janelia Scientific Computing Software Overview (2023)
08:19
Janelia Workstation Overview
56:19
Sci Viz 2022-04-28: From Visual Analytics to Interactive Data Stories (Robert Krueger)
01:26:07
Sci Viz 2022-05-12: Advanced Rendering Methods for Scientific Insight (John Stone)
47:43
Sci Viz 2022-04-14: VisPy, Datoviz, PyGfx
01:19:55
How to ... Annotate using Paintera - Alyson Petruncio and Caleb Hulbert
01:19:07
Sci Viz 2022-03-31: Neuroglancer (Jeremy Maitin-Shepard)
01:05:34
How To... Manually Register Images with BigWarp - John Bogovic
01:37:07
How to... Get Started on the Janelia Compute Cluster - Rob Lines
01:18:30
How to... Motion Correct Time Series Using Image Registration - Greg Fleishman
11:42
Video Annotation Software
08:43
Cellpose and Suite2p
08:25
BigWarp
08:42
KiloSort
01:16:16
Sci Viz 2022-03-03: Napari (Loic Royer)
36:26
How to... run a DASK cluster easily - Greg Fleishman
29:31
How to... Get Started with Julia - Ben Arthur
06:10
How to.. produce videos with BigDataViewer - Marwan Zouinkhi
01:12:58
How to... employ established deep learning techniques without coding using DeCapo - William Patton
25:25
How to… make sense of multifish pipeline output using Napari - Yuhan Wang
32:31
How to... run matlab at scale in Python - Greg Fleishman
27:41
How to... compile your Julia code ahead of time - Mark Kittisopikul
01:03:50
Sci Viz 2022-02-17: Khronos ANARI (Jefferson Amstutz)
00:56
HortaCloud - neuron tracing
00:31
HortaCloud - 2D/3D microscopy visualization
01:22
HortaCloud - 3D neuron annotation
01:08:55
Sci Viz 2022-02-03: AGAVE 3d pathtrace image viewer (Dan Toloudis)