Lecture BioImage Analysis 2020
39 videos • 53,006 views • by haesleinhuepf
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01a Introduction to Bio-Image Analysis
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01b Introduction to Bio-Image Analysis with Fiji
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02a Image Filtering and Segmentation
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02b Image Filtering and Segmentation with Fiji
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03a Feature extraction
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03b Introduction to ImageJ Macro Programming: Variables and operations
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03c ImageJ Macro programming: Recording Macros and working with images
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03d ImageJ Macro programming: Conditions and loops
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04a ImageJ macro programming: ROIs and Overlays
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04b ImageJ macro programming: Functions, Arrays, Plots and Tables
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04c ImageJ macro programming: User Interfaces
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04d Writing good code
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05a BioImage Analysis with Cell Profiler
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05b BioImage Analysis with KNIME Image Processing
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05c BioImage Analysis with Icy BioImaging
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16
GPU-accelerated Image Processing with CLIJ2 - [NEUBIASAcademy@Home] Webinar
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07a Spot detection and Tracking
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07b Trackmate
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08a Machine Learning for Pixel and Object Classification
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08b Machine Learning for Pixel Classification in Fiji
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08c Machine Learning for Pixel and Object Classification in ilastik
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09a Descriptive [Bio-]statistics
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09b Scientific Data Analysis with Python
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10a Method comparsion and Bland-Altman plots
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10b Python Programming: Conditions, data structures, for loops and functions
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10c Bio-Image Analysis using scikit-image in Python
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10d Processing tables with python using numpy and pandas
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11a Hypothesis Testing [high res]
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11b Hypothesis Testing in Python [highres]
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11c Writing pythonic code [highres]
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12a Volumetric Image Processing
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12b 3D Image Visualisation in Fiji
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12c 3D Image Processing in Fiji
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12d 3D Image Visualisation and Processing in Python using scikit-image, itk and napari
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13a Multi-dimensional image processing
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13b Multi-dimensional Image Processing in Fiji
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14a Image Registration
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14b Image Registration in Fiji
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39
14c Applied Bio-Image Analysis Lecture 2020 - A Summary
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