Recipe: Find differentially expressed genes in RNA-Seq data
5 videos • 2,259 views • by GenomeSpace This recipe provides one method to identify differentially expressed genes in RNA-Seq read data. In particular, this Recipe uses the UCSC Table Browser to retrieve a reference genome to align RNA-Seq reads against. We also uses several modules in GenePattern to align the reads against the reference genome, and to identify differentially expressed genes when comparing two conditions. Finally, we use IGV to visualize the differentially expressed genes.