Recipe: Build and Visualize a Module Network Using Putative Aberrant Regions and Expression Data
9 videos • 155 views • by GenomeSpace
1
Obtaining a reference genome using UCSC through Galaxy
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2
Find genes in CNV regions using the "Operate on Genomic Intervals" tool in Galaxy
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3
Trimming files using the "Text Manipulation" tool in Galaxy
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4
Removing duplicate IDs from data using the Group tool in Galaxy
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5
Transferring files from Galaxy to GenomeSpace
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6
Sending data from GenomeSpace to GenePattern's PreprocessDataset module
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7
Transferring data from GenePattern to GenomeSpace
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8
Loading data from GenomeSpace into Genomica
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9
Creating a module network using Genomica
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