08:49
Pathogen genomics: a new era in global health surveillance and strategy: How we can be prepared
01:42
Pathogen genomics: a new era in global health surveillance and strategy - the biggest lesson learnt
07:58
transparency when disseminating scientific data: communication with policymakers
04:58
disseminating scientific information: communication with media and general public
03:35
Establishing genomics surveillance
07:03
Genomics for tuberculosis: impact and challenges
11:52
The role of regional health organisations to tackle antimicrobial resistance
08:16
National genome surveillance for antimicrobial resistance
07:48
transferring knowledge to improve the surveillance of pathogens of public health relevance.
12:34
Pathogen genomics- new era in global health surveillance and strategy: How to prevent misinformation
10:47
HIV Phylogenetics - Ethical communication of results
03:36
Using wastewater to monitor COVID-19
05:22
Overview of web-based bioinformatics analyses using Galaxy
09:22
How to share pathogen genomic data
13:33
How different countries tackled the COVID-19 pandemic: an example (in French)
08:43
a new era in global health surveillance and strategy: What genomic data could tell us
01:56
A new era in global health surveillance and strategy - Working together to build capacity
04:38
Pathogen genomics: a new era in global health surveillance and strategy -Pathogen monitoring
04:59
Lessons learned: how to be prepared for the next pandemic
05:38
Walk-through of sequencing process
04:59
scaling up in pandemic video 3
06:16
A practical guide for SARS-CoV-2 whole-genome sequencing: Challenges and how to overcome them
04:58
A practical guide for SARS-CoV-2 whole-genome sequencing: Legacies of the COVID-19 pandemic
05:50
A practical guide for SARS-CoV-2 whole-genome sequencing: Coordinating human resources in a pandemic
04:02
A practical guide for SARS-CoV-2 whole-genome sequencing: What happens to samples after sequencing
08:22
A practical guide for SARS-CoV-2 whole-genome sequencing: Establishing collaborations in a pandemic
04:17
Using sequencing data to identify outbreaks in a hospital
03:57
A practical guide for SARS-CoV-2 genome sequencing: How to prevent sequencing and sampling bias
06:38
A practical guide for SARS-CoV-2 sequencing: How to plan ordering and tracking of reagents
11:46
A practical guide for SARS-CoV-2 whole-genome sequencing: How to avoid contamination
12:24
A practical guide for SARS-CoV-2 sequencing: Comparing manual and automated methodologies
09:26
How SARS-CoV-2 has been sequenced around the world
07:06
A practical guide for SARS-CoV-2 sequencing: Illumina - pooling samples and loading cartridges
09:11
How SARS-CoV-2 primer sets were designed
09:49
A practical guide for SARS-CoV-2 whole-genome sequencing: Assessing the quality of nucleic acid
06:27
How to handle SARS-CoV-2 primary samples
05:22
How and where to obtain the public SARS-CoV-2 genomes data
09:24
Tutorial on phylogenetics
02:06
Using and interpreting Nextclade tutorial
07:10
Variant calling tutorial
02:48
Using existing workflows on Galaxy
02:03
Processing data on Galaxy
01:39
Importing data onto Galaxy
03:11
SARS-CoV-2 replication cycle
07:25
Testing, Sequencing, and Sharing During a Pandemic: Importance of implementing local capacity.
00:47
Testing, Sequencing, and Sharing During a Pandemic: How to promote data sharing.
09:25
Testing, Sequencing, and Sharing During a Pandemic: How to establish fruitful and fair collaboration
02:08
How do FAIR principles apply in a public health emergency
02:48
Testing, Sequencing, and Sharing During a Pandemic: Challenges and limitations of data sharing.
01:09
Opportunities for global collaboration in pathogen genomics.
03:23
Testing, Sequencing, and Sharing in Pandemic: how to be prepared for the next pandemic
05:39
Practical challenges- setting-up a laboratory during lockdown
09:48
Testing, Sequencing, and Sharing in Pandemic: Benefits and challenges of integrating clinical data.
14:23
Testing, Sequencing, and Sharing During a Pandemic: Ensuring sample/data consent and ownership.
09:15
SARS-CoV-2 testing workflow: Scaling up - implementation and how to overcome limitations.
11:05
SARS-CoV-2 testing workflow: High-throughput testing during pandemic response.
03:15
SARS-CoV-2 testing workflows: The role of quality management.
02:07
SARS-CoV-2 testing workflows: The importance of turnaround-time and geographic coverage
04:11
SARS-CoV-2 testing workflows: Understanding the different sources of samples for testing.
03:23
Testing during a pandemic: How to avoid the pitfalls and get trustable results?
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About
COG-Train is an international educational initiative providing open-access learning in SARS-CoV-2 genomics. It aims to facilitate an increase in global genome sequencing and analysis capacity, reduce sequencing inequality and enhance pathogen surveillance.
The programme’s training courses and development are built around our core concept of partnering with international researchers, public health experts and surveillance networks and providing open-access FREE training for all. COG-Train is funded by Wellcome Trust and the Foreign, Commonwealth & Development Office and led jointly by COVID-19 Genomics UK (COG-UK) consortium and Wellcome Connecting Science (WCS).
Outputs include a series of massive online, open-access courses on all aspects of SARS-CoV-2 sequencing on the FutureLearn platform, as well as week-long intensive virtual training courses, short expert workshops and concurrent distributed classrooms, the latter of which utilises blended training.
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