07:34

Converting Seurat Object into Scanpy Object in R Markdown

14:19

Converting Scanpy Object into Seurat Object in R Markdown

16:53

Analzye Visium High Definition Spatial Dataset with Seurat

12:47

Recreate Seurat Cell Clusters from Xenium Onboard Analysis

12:49

Microbiome Data Analysis Video 3: Create a phyloseq object

11:42

Microbiome Data Analysis in R--Video 2: Prepare otu_table from raw fastq files

10:59

Microbiome Data Analysis in R--Video 1: Prepare otu_table from raw fastq files

14:09

Identify Doublets using Doubletdetection Package in Python

09:51

Identify Doublets using Scrublet Package in Scanpy

17:43

Build Metacells with SuperCell & Analyse Metacells with Seurat

13:51

Create Volcano Plot using the EnhancedVolcano Package

12:11

SEACell Video Tutorial 2: Create Metacells from scRNA-seq Data

12:26

SEACell Video Tutorial 1: Create Metacells from scRNA-seq Data

18:21

CellRank Video Tutorial 7: Cluster Genes with Similar Expression Trends

13:07

CellRank Video Tutorial 6: Visualize Gene Expression Trends

11:55

CellRank Video Tutorial 5: Uncover Driver Genes

11:28

CellRank Video Tutorial 4: Estimating Fate Probabilities

14:36

CellRank Video Tutorial 3: Computing Initial and Terminal Cell States

11:24

CellRank Video Tutorial 2: Computing Pseudotime Transition Matrix

11:56

CellRank Video Tutorial 1: RNA Velocity Transition Matrix

20:00

Cell Differentiation Trajectory Analysis and Cell State Analysis using Palantir

12:47

scRNA-seq Data Analysis in Seurat V5: Analysing SCTransform-normalized Datasets

27:57

scRNA-seq Data Analysis in Seurat V5: Analysing More Than One Dataset

12:11

scRNA-seq Data Analysis in Seurat V5: Analysing Just One Sequencing Dataset

10:50

Maxfuse Video Tutorial 4: CODEX and scRNA-seq Joint Embedding

22:09

Maxfuse Video Tutorial 3: CODEX and scRNA-seq Data Integration

20:41

Maxfuse Video Tutorial 2: CODEX and scRNA-seq Data Preprocessing

08:21

Maxfuse Video Tutorial 1: Introduction

13:17

Spatial Data Analysis using Squidpy: Vizgen MERFISH Mouse Brain Receptor Map

17:41

Spatial Data Analysis using Seurat: Vizgen MERFISH Mouse Brain Receptor Map

18:20

Identify Doublets using scDblFinder in scRNA-seq dataset

13:40

scTCR-seq Data Analysis using Scirpy Part: VI, Query Epitope Database

10:45

scTCR-seq Data Analysis using Scirpy: Part V, Gene Usage

12:40

scTCR-seq Data Analysis using Scirpy: Part IV, Clonotype Analysis

11:41

scTCR-seq Data Analysis using Scirpy: Part III, Define Clonotype and Clonotype Clusters

16:39

scTCR-seq Data Analysis using Scirpy: Part II, Process the Demonstration Data

20:57

scTCR-seq Data Analysis using Scirpy: Part I, Importing Receptor Data

15:42

Spatial Data Analysis using Squidpy: Vizgen MERFISH Mouse Liver Map

12:50

QuPath, Cell Segmentation, Cell detection

20:02

Spatial Data Analysis using Seurat: 10X Genomics Xenium Human Breast Cancer Dataset

14:39

Spatial Data Analysis using Squidpy: 10X Genomics Xenium Human Breast Cancer Dataset

26:49

Spatial Data Analysis using Giotto: Nanostring CosMx Lung Cancer Dataset

23:13

Spatial Data Analysis using Squidpy: Nanostring CosMx Lung Cancer Dataset

28:16

Gene_ID and Protein_ID Annotation using biomaRt

22:33

Spatial Data Analysis Using Giotto: 3D MERfish Dataset Analysis Part II

17:53

Spatial Data Analysis Using Giotto: 3D MERfish Dataset Analysis Part I

21:19

scRNA-seq Data Analysis Using Giotto, Part IV: scRNA-seq Data Integration

09:36

scRNA-seq Data Analysis Using Giotto, Part III: Subset and Re-cluster

12:32

scRNA-seq Data Analysis Using Giotto, Part II: Differential Expression and Cell Type Annotation

25:00

scRNA-seq Data Analysis Using Giotto, Part I: Standard Workflow

32:20

Spatial Data Analysis Using Giotto: 3D STARmap Mouse Cortex Dataset

33:58

Spatial Data Analysis Using Giotto: CODEX (Akoya PhenoCycler) Mouse Spleen Dataset

13:03

Spatial Data Analysis using Seurat: CODEX (Akoya PhenoCycler) Human Lymph Node Dataset

28:19

DESeq2 Video Tutorial 2: scRNA-seq Data Analysis

29:26

DESeq2 Video Tutorial 1: Bulk RNA-seq Data Analysis

21:43

Bisulfite Sequencing Data Analysis: Differential Methylation in Gene Promoters

29:42

Bisulfite Sequencing Data Analysis: Differential Methylation Analysis at CpG Loci

30:32

Alternative RNA Splicing Analysis: edgeR Video Tutorial 2

21:59

Standard edgeR Workflow: edgeR Video Tutorial 1

31:56

Pesudo-bulk RNA TutorialsVideo 3: Complex edgeR Pipeline