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GenomeSpace @UCfJ2_KaGrcmsNguNor5cgtg@youtube.com

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02:29
Running a pipeline of modules for analyzing RNA-Seq data in GenePattern
01:14
Processing the reference genome using Picard.CreateSequenceDictionary and SAMtools.FastaIndex
00:38
Transferring data from GenePattern to GenomeSpace
03:38
Creating a pipeline of modules for analyzing RNA-Seq data in GenePattern
01:00
Identifying the top 50 genes with GenePatterns Extract ComparativeMarkerResults module
00:54
Running FastQC in Galaxy
00:53
Trimming files in GenePattern using the SelectFileMatrix module
01:34
Creating a module network using Genomica
00:42
Loading data from GenomeSpace into Genomica
01:39
Using FASTQ Groomer and Clip to remove adapter sequences from RNA-Seq data in Galaxy
00:49
Finding differentially expressed genes (GenePattern "ComparativeMarkerSelection" Module)
01:15
Obtaining a reference genome using UCSC through Galaxy
00:39
Removing duplicate IDs from data using the Group tool in Galaxy
00:44
Sending data from GenomeSpace to GenePattern's PreprocessDataset module
04:18
Driving Biological Project - Step 1
02:30
Evaluate the differential expression of a dataset using Cufflinks.cuffdiff in GenePattern
02:08
Visualizing gene knock-outs using RNA-Seq data in the Integrative Genomics Viewer (IGV)
09:10
Driving Biological Project - Step 3
04:01
Driving Biological Project - Step 6
02:27
Create an index for a BAM file using the Picard.SortSam tool in GenePattern
02:40
Driving Biological Project - Step 5
04:15
Driving Biological Project - Step 4
04:50
Driving Biological Project - Step 2
01:08
Driving Biological Project - Step 8
02:17
Driving Biological Project - Step 13
01:02
Driving Biological Project - Step 10
01:55
Obtaining a reference genome from the UCSC Table Browser (GTF files)
02:29
Aligning RNA-Seq reads to a reference genome using TopHat in GenePattern
00:53
Driving Biological Project - Step 12
08:34
Driving Biological Project - Step 11
04:45
Driving Biological Project - Step 7
03:00
Driving Biological Project - Step 14
06:22
Driving Biological Project - Step 9
00:55
Copying data from the GenomeSpace Public Folder into your personal GenomeSpace account